# Produced by delphy version 1.3.4 (build 2054, commit 005fbdc) # Invocation: ./tools/delphy-1.3.4/delphy v0-in-fasta analysis/yellow-fever/tree/latest_yfv_context.dated.aligned.fasta v0-steps 10000 v0-threads 2 v0-seed 20260609 v0-log-every 100 v0-tree-every 100 v0-out-log-file analysis/yellow-fever/tree/delphy/yfv_context_10000.log v0-out-trees-file analysis/yellow-fever/tree/delphy/yfv_context_10000.trees v0-out-delphy-file analysis/yellow-fever/tree/delphy/yfv_context_10000.dphy # Seed: 20260609 # Parallelism: 2 state numMuts posterior_for_Delphy prior_for_Delphy likelihood_really_logG rootHeight age(root) treeLength exponential.popSize exponential.growthRate kappa frequencies1 frequencies2 frequencies3 frequencies4 clock.rate meanRate treeLikelihood_really_logG branchRates coalescent 0 30472 -465114 -3133.08 -461981 196.726 1829.71 2139.98 3 0 1 0.278218 0.217271 0.284386 0.220125 0.001 0.001 -461981 0.0 -5272.45 100 30471 -450440 1734.63 -452174 196.726 1829.71 2140.08 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452174 0.0 -401.525 200 30473 -450465 1734.67 -452200 196.726 1829.71 2140.04 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452200 0.0 -401.485 300 30474 -450482 1734.67 -452217 196.726 1829.71 2140.19 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452217 0.0 -401.485 400 30474 -450485 1734.65 -452220 196.726 1829.71 2140.36 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452220 0.0 -401.509 500 30478 -450543 1734.66 -452278 196.726 1829.71 2140.49 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452278 0.0 -401.502 600 30477 -450529 1734.69 -452264 196.726 1829.71 2140.43 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452264 0.0 -401.467 700 30485 -450642 1734.67 -452376 196.726 1829.71 2140.53 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452376 0.0 -401.486 800 30485 -450643 1734.64 -452378 196.726 1829.71 2140.65 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452378 0.0 -401.52 900 30485 -450645 1734.62 -452380 196.712 1829.72 2140.74 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452380 0.0 -401.537 1000 30484 -450625 1734.68 -452359 196.712 1829.72 2140.39 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452359 0.0 -401.479 1100 30484 -450625 1734.68 -452360 196.712 1829.72 2140.45 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452360 0.0 -401.477 1200 30495 -450773 1734.71 -452507 196.712 1829.72 2140.37 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452507 0.0 -401.446 1300 30535 -451309 1734.76 -453044 196.712 1829.72 2140.11 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453044 0.0 -401.401 1400 30535 -451310 1734.75 -453045 196.712 1829.72 2140.18 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453045 0.0 -401.402 1500 30537 -451340 1734.71 -453075 196.756 1829.68 2140.15 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453075 0.0 -401.447 1600 30538 -451218 1738.33 -452956 196.756 1829.68 2131.01 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -452956 0.0 -397.823 1700 30547 -451344 1738.35 -453082 196.77 1829.66 2131.03 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453082 0.0 -397.808 1800 30549 -451408 1738.23 -453147 196.803 1829.63 2133.55 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453147 0.0 -397.922 1900 30549 -451386 1739.05 -453125 196.836 1829.6 2132.04 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453125 0.0 -397.105 2000 30551 -451416 1739.01 -453155 196.836 1829.6 2132.22 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453155 0.0 -397.151 2100 30551 -451415 1739.06 -453154 196.836 1829.6 2132.12 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453154 0.0 -397.095 2200 30549 -451391 1738.98 -453130 196.838 1829.59 2132.39 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453130 0.0 -397.174 2300 30549 -451395 1738.83 -453134 196.838 1829.59 2132.67 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453134 0.0 -397.324 2400 30550 -451340 1739.06 -453079 196.838 1829.59 2127.87 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453079 0.0 -397.093 2500 30551 -451315 1739.2 -453054 196.874 1829.56 2125.41 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453054 0.0 -396.956 2600 30551 -451301 1739.29 -453041 196.874 1829.56 2124.47 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453041 0.0 -396.871 2700 30551 -451304 1739.27 -453044 196.874 1829.56 2124.66 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453044 0.0 -396.882 2800 30551 -451305 1739.27 -453045 196.874 1829.56 2124.73 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453045 0.0 -396.891 2900 30551 -451307 1739.23 -453047 196.874 1829.56 2124.86 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453047 0.0 -396.927 3000 30555 -451362 1739.29 -453101 196.874 1829.56 2124.76 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453101 0.0 -396.869 3100 30557 -451386 1739.32 -453125 196.866 1829.57 2124.45 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453125 0.0 -396.837 3200 30557 -451385 1739.35 -453124 196.89 1829.54 2124.42 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453124 0.0 -396.81 3300 30564 -451468 1739.35 -453207 196.852 1829.58 2124.3 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453207 0.0 -396.802 3400 30564 -451467 1739.36 -453206 196.858 1829.58 2124.24 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453206 0.0 -396.801 3500 30564 -451471 1739.33 -453211 196.858 1829.58 2124.52 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453211 0.0 -396.822 3600 30571 -451565 1739.31 -453304 196.877 1829.56 2124.38 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453304 0.0 -396.848 3700 30571 -451565 1739.24 -453305 196.877 1829.56 2124.42 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453305 0.0 -396.92 3800 30571 -451557 1739.36 -453297 196.877 1829.56 2123.87 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453297 0.0 -396.794 3900 30575 -451611 1739.36 -453350 196.877 1829.56 2123.85 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -453350 0.0 -396.796 4000 30718 -454534 1737.88 -456272 196.877 1829.56 2189.06 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456272 0.0 -398.279 4100 30718 -454539 1737.76 -456277 196.877 1829.56 2189.41 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456277 0.0 -398.399 4200 30718 -454541 1737.75 -456279 196.877 1829.56 2189.56 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456279 0.0 -398.404 4300 30718 -454545 1737.76 -456283 196.877 1829.56 2189.82 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456283 0.0 -398.394 4400 30718 -454547 1737.76 -456285 196.888 1829.55 2189.95 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456285 0.0 -398.399 4500 30717 -454526 1737.81 -456264 196.844 1829.59 2189.6 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456264 0.0 -398.347 4600 30717 -454525 1737.8 -456263 196.847 1829.59 2189.5 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456263 0.0 -398.361 4700 30716 -454513 1737.67 -456250 196.781 1829.65 2189.67 37.7673 -0.0201029 2.71625 0.283115 0.214631 0.268503 0.233751 0.00133037 0.00133037 -456250 0.0 -398.487 4800 30716 -452670 1810.26 -454480 196.781 1829.65 2189.49 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454480 0.0 -323.242 4900 30716 -452664 1810.28 -454474 196.767 1829.67 2189.09 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 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0.0 -323.131 5600 30717 -452652 1810.35 -454462 196.778 1829.65 2187.56 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454462 0.0 -323.153 5700 30717 -452632 1810.39 -454443 196.778 1829.65 2186.19 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454443 0.0 -323.112 5800 30717 -452635 1810.38 -454445 196.778 1829.65 2186.35 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454445 0.0 -323.119 5900 30714 -452580 1810.42 -454390 196.778 1829.65 2185.4 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454390 0.0 -323.085 6000 30714 -452580 1810.42 -454391 196.778 1829.65 2185.46 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454391 0.0 -323.083 6100 30714 -452578 1810.43 -454389 196.773 1829.66 2185.34 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454389 0.0 -323.072 6200 30712 -452546 1810.43 -454357 196.773 1829.66 2185.14 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454357 0.0 -323.071 6300 30712 -452547 1810.43 -454357 196.773 1829.66 2185.18 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454357 0.0 -323.073 6400 30712 -452553 1810.41 -454363 196.773 1829.66 2185.58 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454363 0.0 -323.088 6500 30716 -452610 1810.4 -454420 196.773 1829.66 2185.76 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -454420 0.0 -323.102 6600 30896 -456107 1809.56 -457916 196.773 1829.66 2251.49 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457916 0.0 -323.937 6700 30896 -456109 1809.55 -457919 196.751 1829.68 2251.65 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457919 0.0 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-323.849 7400 30880 -455729 1809.65 -457539 196.767 1829.67 2242.26 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457539 0.0 -323.851 7500 30880 -455730 1809.66 -457540 196.767 1829.67 2242.32 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457540 0.0 -323.844 7600 30880 -455719 1809.68 -457528 196.767 1829.67 2241.48 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457528 0.0 -323.82 7700 30880 -455719 1809.68 -457528 196.759 1829.67 2241.5 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457528 0.0 -323.823 7800 30880 -455720 1809.66 -457530 196.759 1829.67 2241.62 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457530 0.0 -323.838 7900 30864 -455454 1809.65 -457264 196.759 1829.67 2241.27 225.693 -0.00687855 5.51634 0.285784 0.217428 0.256324 0.240464 0.00129241 0.00129241 -457264 0.0 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